PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G06210.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 248aa    MW: 27668.2 Da    PI: 8.199
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G06210.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.72.1e-252978251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     ri+n   rqvtfskRr g++KKAeELS+LCdaev +++fs tgkl+ ++s
  ORUFI03G06210.1 29 RIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFQFAS 78
                     89*********************************************986 PP

2K-box40.21.4e-141101901898
            K-box  18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      +   a+Lk+e+ +    +R++ Ge+L++L++++Lq+Le+ Le++l ++ ++K++ +l++i+ l +k  +l een +L++++
  ORUFI03G06210.1 110 SSTCARLKEELAETSLRLRQMRGEELHRLNVEQLQELEKSLESGLGSVLKTKSKKILDEIDGLERKRMQLIEENLRLKEQV 190
                      66789**********99************************************************************9997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.1E-332079IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.3192080IPR002100Transcription factor, MADS-box
PROSITE patternPS0035002276IPR002100Transcription factor, MADS-box
CDDcd002651.35E-372293No hitNo description
PRINTSPR004045.8E-252242IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-292294IPR002100Transcription factor, MADS-box
PfamPF003191.8E-242976IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-254257IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-255778IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.015106196IPR002487Transcription factor, K-box
PfamPF014861.0E-12111190IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009910Biological Processnegative regulation of flower development
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048438Biological Processfloral whorl development
GO:0005634Cellular Componentnucleus
GO:0000900Molecular Functiontranslation repressor activity, nucleic acid binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MAGGGGGGGR GEGEGRAATG KRERIAIRRI DNLAARQVTF SKRRRGLFKK AEELSILCDA  60
EVGLVVFSAT GKLFQFASTS MKQIIDRYNS HSKTLQRAEP SQLDLQGEDS STCARLKEEL  120
AETSLRLRQM RGEELHRLNV EQLQELEKSL ESGLGSVLKT KSKKILDEID GLERKRMQLI  180
EENLRLKEQV SRMSRMEEMQ PGPDSEIVYE EGQSSESVTN ASYPRPPPDN DYSSDTSLRL  240
GLSLFSSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_D2e-192292272MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_C2e-192292272MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_B2e-192292272MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_A2e-192292272MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
3p57_J2e-192292272Myocyte-specific enhancer factor 2A
3p57_I2e-192292272Myocyte-specific enhancer factor 2A
3p57_D2e-192292272Myocyte-specific enhancer factor 2A
3p57_C2e-192292272Myocyte-specific enhancer factor 2A
3p57_B2e-192292272Myocyte-specific enhancer factor 2A
3p57_A2e-192292272Myocyte-specific enhancer factor 2A
3kov_J2e-192292272Myocyte-specific enhancer factor 2A
3kov_I2e-192292272Myocyte-specific enhancer factor 2A
3kov_B2e-192292272Myocyte-specific enhancer factor 2A
3kov_A2e-192292272Myocyte-specific enhancer factor 2A
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00272DAPTransfer from AT2G22540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2422110.0AK242211.1 Oryza sativa Japonica Group cDNA, clone: J075171C16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630611.11e-178PREDICTED: MADS-box transcription factor 47 isoform X2
SwissprotQ5K4R01e-161MAD47_ORYSJ; MADS-box transcription factor 47
TrEMBLA0A0E0G2B41e-179A0A0E0G2B4_ORYNI; Uncharacterized protein
TrEMBLA0A0E0NQQ91e-179A0A0E0NQQ9_ORYRU; Uncharacterized protein
TrEMBLB8APQ41e-179B8APQ4_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA011317-PA1e-178(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12213697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.12e-68MIKC_MADS family protein